- Use of Bowtie/TopHat
- ‘Regular mode’ vs. ‘Fusion mode’
- Introduction to the BAM format
- Basic manipulation of BAMs with samtools, etc.
- Visualization of RNA-seq alignments – IGV
- BAM read counting and determination of variant allele expression status
This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces s …
June 8, 2019
This Critical Guide in the Introduction to Bioinformatics series briefly outlines how to e …
June 6, 2019
This Practical Guide in the Bringing Bioinformatics into the Classroom series outlines a n …
March 18, 2019
This Critical Guide in the Introduction to Bioinformatics series provides a brief outline …
September 8, 2018
This Critical Guide in the Introduction to Bioinformatics series provides an introduction …
September 8, 2018
This Critical Guide in the Introduction to Bioinformatics series provides a brief outline …
September 8, 2018
This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Un …
September 8, 2018
This Critical Guide briefly presents the need for biological databases and for a standard …
September 8, 2018
This Critical Guide in the Introduction to Bioinformatics series provides an overview of t …
September 8, 2018
Claire O’Donovan, leader of the Protein Function Content team at EMBL-EBI, gives an introd …
May 11, 2018
If you work in the life sciences, you may find that you’re spending less time doing experi …
May 11, 2018
These Online Educational Resources (OERs) cover a variety of topics related to data scienc …
April 2, 2018