RNA-seq Analysis 2014 Module 2 – Alignment and Visualization

Submitted by Michelle Brazas on June 27, 2014

Use of Bowtie/TopHat
‘Regular mode’ vs. ‘Fusion mode’
Introduction to the BAM format
Basic manipulation of BAMs with samtools, etc.
Visualization of RNA-seq alignments - IGV
BAM read counting and determination of variant allele expression status

Link

www.bioinformatics.ca

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RNA-seq Analysis 2014 Module 2 – Alignment and Visualization

Link

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